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1

A review of variable selection methods in Partial Least Squares Regression

Tahir Mehmood, Kristian Hovde Liland, Lars Snipen, Solve Sæbø

Journal:

Chemometrics and Intelligent Laboratory Systems

Année:

2012

Langue:

english

Fichier:

PDF, 662 KB

english, 2012

2

Analysis of intra-genomic GC content homogeneity within prokaryotes

Jon Bohlin, Lars Snipen, Simon P Hardy, Anja B Kristoffersen, Karin Lagesen, Torunn Dønsvik, Eystein Skjerve, David W Ussery

Journal:

Année:

2010

Langue:

english

Fichier:

PDF, 613 KB

english, 2010

3

A Partial Least Squares based algorithm for parsimonious variable selection

Tahir Mehmood, Harald Martens, Solve Sæbø, Jonas Warringer, Lars Snipen

Journal:

Algorithms for Molecular Biology

Année:

2011

Langue:

english

Fichier:

PDF, 353 KB

english, 2011

4

Predicting live-chilling dynamics of Atlantic salmon (Salmo salar)

Per Olav Skjervold, Svein Olav Fjæra, Lars Snipen

Journal:

Année:

2002

Langue:

english

Fichier:

PDF, 164 KB

english, 2002

5

Standard operating procedure for computing pangenome trees

Snipen, Lars, Ussery, David W.

Journal:

Standards in Genomic Sciences

Année:

2010

Langue:

english

Fichier:

PDF, 876 KB

english, 2010

6

Evolution of the immune system influences speciation rates in teleost fishes

Malmstrøm, Martin, Matschiner, Michael, Tørresen, Ole K, Star, Bastiaan, Snipen, Lars G, Hansen, Thomas F, Baalsrud, Helle T, Nederbragt, Alexander J, Hanel, Reinhold, Salzburger, Walter, Stenseth, Ni

Journal:

Nature Genetics

Année:

2016

Langue:

english

Fichier:

PDF, 1.64 MB

english, 2016

7

Comparison of reduced metagenome and 16S rRNA gene sequencing for determination of genetic diversity and mother-child overlap of the gut associated microbiota

Ravi, Anuradha, Avershina, Ekaterina, Angell, Inga Leena, Ludvigsen, Jane, Manohar, Prashanth, Padmanaban, Sumathi, Nachimuthu, Ramesh, Snipen, Lars, Rudi, Knut

Journal:

Journal of Microbiological Methods

Année:

2018

Langue:

english

Fichier:

PDF, 1.50 MB

english, 2018

8

Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell

Liu, Binbin, Zhang, Xiaojun, Bakken, Lars R., Snipen, Lars, Frostegård, Åsa

Journal:

Frontiers in Microbiology

Année:

2019

Fichier:

PDF, 2.99 MB

2019

9

Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell

Liu, Binbin, Zhang, Xiaojun, Bakken, Lars R., Snipen, Lars, Frostegård, Åsa

Journal:

Frontiers in Microbiology

Année:

2019

Langue:

english

Fichier:

PDF, 2.99 MB

english, 2019

10

Predicting Plant Height of Greenhouse Grown Crops with a Polynomial Growth Rate Model

Lars Gustav Snipen

Journal:

Biometrical Journal

Année:

1998

Langue:

english

Fichier:

PDF, 273 KB

english, 1998

11

Adjusted Prediction of Plant Height with Application to Greenhouse Grown Poinsettias

Solve Sæbø, Trygve Almøy, Lars Snipen

Journal:

Biometrical Journal

Année:

2001

Langue:

english

Fichier:

PDF, 330 KB

english, 2001

12

Regression as a Method to Predict Copy Numbers in Comparative Genomic Hybridization Studies on Bacteria

Guri Feten, Trygve Almøy, Lars Snipen, Ågot Aakra, Are H. Aastveit

Journal:

Biometrical Journal

Année:

2006

Langue:

english

Fichier:

PDF, 282 KB

english, 2006

13

Mixture Models as a Method to Find Present and Divergent Genes in Comparative Genomic Hybridization Studies on Bacteria

Guri Feten, Trygve Almøy, Lars Snipen, Ågot Aakra, O. Ludvig Nyquist, Are H. Aastveit

Journal:

Biometrical Journal

Année:

2007

Langue:

english

Fichier:

PDF, 6.75 MB

english, 2007

14

Probabilistically assisted spot segmentation — With application to DNA microarray images

Øystein Gjerstad, Ågot Aakra, Lars Snipen, Ulf Indahl

Journal:

Chemometrics and Intelligent Laboratory Systems

Année:

2009

Langue:

english

Fichier:

PDF, 611 KB

english, 2009

15

Mining for genotype-phenotype relations in Saccharomyces using partial least squares

Tahir Mehmood, Harald Martens, Solve Sæbø, Jonas Warringer, Lars Snipen

Journal:

BMC Bioinformatics

Année:

2011

Langue:

english

Fichier:

PDF, 285 KB

english, 2011

16

Global transcriptome response inLactobacillus sakeiduring growth on ribose

Anette McLeod, Lars Snipen, Kristine Naterstad, Lars Axelsson

Journal:

BMC Microbiology

Année:

2011

Langue:

english

Fichier:

PDF, 454 KB

english, 2011

17

Comparative genomic analysis reveals significant enrichment of mobile genetic elements and genes encoding surface structure-proteins in hospital-associated clonal complex 2Enterococcus faecalis

Margrete Solheim, Mari C Brekke, Lars G Snipen, Rob JL Willems, Ingolf F Nes, Dag A Brede

Journal:

BMC Microbiology

Année:

2011

Langue:

english

Fichier:

PDF, 1.44 MB

english, 2011

18

On the Origins of aVibrioSpecies

Tammi Vesth, Trudy M. Wassenaar, Peter F. Hallin, Lars Snipen, Karin Lagesen, David W. Ussery

Journal:

Microbial Ecology

Année:

2010

Langue:

english

Fichier:

PDF, 667 KB

english, 2010

19

Comparative genomics ofLactobacillus sakeiwith emphasis on strains from meat

O. Ludvig Nyquist, Anette McLeod, Dag A. Brede, Lars Snipen, Ågot Aakra, Ingolf F. Nes

Journal:

Molecular Genetics and Genomics

Année:

2011

Langue:

english

Fichier:

PDF, 643 KB

english, 2011

20

Identification of PaCOL1 and PaCOL2, two CONSTANS-like genes showing decreased transcript levels preceding short day induced growth cessation in Norway spruce

Anna Holefors, Lars Opseth, Anne Katrine Ree Rosnes, Linda Ripel, Lars Snipen, Carl Gunnar Fossdal, Jorunn E. Olsen

Journal:

Plant Physiology and Biochemistry

Année:

2009

Langue:

english

Fichier:

PDF, 2.87 MB

english, 2009

21

Diversity of Lactobacillus sakei strains investigated by phenotypic and genotypic methods

Anette McLeod, O. Ludvig Nyquist, Lars Snipen, Kristine Naterstad, Lars Axelsson

Journal:

Systematic and Applied Microbiology

Année:

2008

Langue:

english

Fichier:

PDF, 391 KB

english, 2008

22

Improved analysis of bacterial CGH data beyond the log-ratio paradigm

Lars Snipen, Otto L Nyquist, Margrete Solheim, Ågot Aakra, Ingolf F Nes

Journal:

BMC Bioinformatics

Année:

2009

Langue:

english

Fichier:

PDF, 2.44 MB

english, 2009

23

Detection of divergent genes in microbial aCGH experiments

Lars Snipen, Dirk Repsilber, Ludvig Nyquist, Andreas Ziegler, Ågot Aakra, Are Aastveit

Journal:

BMC Bioinformatics

Année:

2006

Langue:

english

Fichier:

PDF, 1.00 MB

english, 2006

24

Genomic comparisons ofBrucellaspp. and closely related bacteria using base compositional and proteome based methods

Jon Bohlin, Lars Snipen, Axel Cloeckaert, Karin Lagesen, David Ussery, Anja B Kristoffersen, Jacques Godfroid

Journal:

BMC Evolutionary Biology

Année:

2010

Langue:

english

Fichier:

PDF, 5.35 MB

english, 2010

25

Comparative genomics ofEnterococcus faecalisfrom healthy Norwegian infants

Margrete Solheim, Ågot Aakra, Lars G Snipen, Dag A Brede, Ingolf F Nes

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 935 KB

english, 2009

26

Microbial comparative pan-genomics using binomial mixture models

Lars Snipen, Trygve Almøy, David W Ussery

Journal:

Année:

2009

Langue:

english

Fichier:

PDF, 452 KB

english, 2009

27

Influence of potential growth factors in predicting time to flowering in poinsettia (Euphorbia pulcherrima)

Lars G. Snipen, Roar Moe, Jan Søreng

Journal:

Scientia Horticulturae

Année:

1999

Langue:

english

Fichier:

PDF, 255 KB

english, 1999

28

Microarray-based transcriptome of Listeria monocytogenes adapted to sublethal concentrations of acetic acid, lactic acid, and hydrochloric acid

Tessema, Girum Tadesse, Møretrø, Trond, Snipen, Lars, Heir, Even, Holck, Askild, Naterstad, Kristine, Axelsson, Lars

Journal:

Canadian Journal of Microbiology

Année:

2012

Fichier:

PDF, 960 KB

2012

29

Exploration of multivariate analysis in microbial coding sequence modeling

Tahir Mehmood, Jon Bohlin, Anja Bråthen Kristoffersen, Solve Sæbø, Jonas Warringer, Lars Snipen

Journal:

BMC Bioinformatics

Année:

2012

Langue:

english

Fichier:

PDF, 251 KB

english, 2012

30

Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands

Jon Bohlin, Mark WJ van Passel, Lars Snipen, Anja B Kristoffersen, David Ussery, Simon P Hardy

Journal:

Année:

2012

Langue:

english

Fichier:

PDF, 4.23 MB

english, 2012

31

Analysis of evolutionary patterns of genes inCampylobacter jejuniandC. coli

Lars Snipen, Trudy M Wassenaar, Eric Altermann, Jonathan Olson, Sophia Kathariou, Karin Lagesen, Monica Takamiya, Susanne Knøchel, David W Ussery, Richard J Meinersmann

Journal:

Microbial Informatics and Experimentation

Année:

2012

Langue:

english

Fichier:

PDF, 555 KB

english, 2012

32

Improving stability and understandability of genotype-phenotype mapping inSaccharomycesusing regularized variable selection in L-PLS regression

Tahir Mehmood, Jonas Warringer, Lars Snipen, Solve Sæbø

Journal:

BMC Bioinformatics

Année:

2012

Langue:

english

Fichier:

PDF, 281 KB

english, 2012

33

A systematic search for discriminating sites in the 16S ribosomal RNA gene

Vinje, Hilde, Almøy, Trygve, Liland, Kristian, Snipen, Lars

Journal:

Microbial Informatics and Experimentation

Année:

2014

Langue:

english

Fichier:

PDF, 1.13 MB

english, 2014

34

Calendar

Dørum, Guro, Bleka, Øyvind, Gill, Peter, Haned, Hinda, Snipen, Lars, Sæbø, Solve, Egeland, Thore

Journal:

Neurobiology of Aging

Année:

1992

Langue:

english

Fichier:

PDF, 152 KB

english, 1992

35

Exact computation of the distribution of likelihood ratios with forensic applications

Dørum, Guro, Bleka, Øyvind, Gill, Peter, Haned, Hinda, Snipen, Lars, Sæbø, Solve, Egeland, Thore

Journal:

Forensic Science International: Genetics

Année:

2014

Langue:

english

Fichier:

PDF, 520 KB

english, 2014

36

On the Origins of a Vibrio Species

Tammi Vesth, Trudy M. Wassenaar, Peter F. Hallin, Lars Snipen, Karin Lagesen and David W. Ussery

Journal:

Microbial Ecology

Année:

2010

Langue:

english

Fichier:

PDF, 2.78 MB

english, 2010

37

A Partial Least Squares Based Procedure for Upstream Sequence Classification in Prokaryotes

Mehmood, Tahir, Bohlin, Jon, Snipen, Lars

Journal:

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 476 KB

english, 2015

38

Staphylococcus aureus nasal isolates from healthy individuals cause highly variable host cell responses in vitro

Askarian, Fatemeh, Sangvik, Maria, Hanssen, Anne-Merethe, Snipen, Lars, Sollid, Johanna U.E., Johannessen, Mona

Journal:

Pathogens and Disease

Année:

2014

Langue:

english

Fichier:

PDF, 237 KB

english, 2014

39

A Genomic Virulence Reference Map of Enterococcus faecalis Reveals an Important Contribution of Phage03-Like Elements in Nosocomial Genetic Lineages to Pathogenicity in a Caenorhabditis elegans Infection Model

La Rosa, Sabina Leanti, Snipen, Lars-Gustav, Murray, Barbara E., Willems, Rob J. L., Gilmore, Michael S., Diep, Dzung B., Nes, Ingolf F., Brede, Dag Anders, Camilli, A.

Journal:

Infection and Immunity

Année:

2015

Langue:

english

Fichier:

PDF, 1.78 MB

english, 2015

40

An evolutionary analysis of genome expansion and pathogenicity in Escherichia coli

Bohlin, Jon, Brynildsrud, Ola B, Sekse, Camilla, Snipen, Lars

Journal:

Année:

2014

Langue:

english

Fichier:

PDF, 2.10 MB

english, 2014

41

micropan: an R-package for microbial pan-genomics

Snipen, Lars, Liland, Kristian Hovde

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 624 KB

english, 2015

42

Smoothing Gene Expression Data with Network Information Improves Consistency of Regulated Genes

Dørum, Guro, Snipen, Lars, Solheim, Margrete, Saebo, Solve

Journal:

Statistical Applications in Genetics and Molecular Biology

Année:

2011

Langue:

english

Fichier:

PDF, 967 KB

english, 2011

43

Rotation Testing in Gene Set Enrichment Analysis for Small Direct Comparison Experiments

Dørum, Guro, Snipen, Lars, Solheim, Margrete, Sæbø, Solve

Journal:

Statistical Applications in Genetics and Molecular Biology

Année:

2009

Langue:

english

Fichier:

PDF, 414 KB

english, 2009

44

The Response of Enterococcus faecalis V583 to Chloramphenicol Treatment

Aakra, Ågot, Vebø, Heidi, Indahl, Ulf, Snipen, Lars, Gjerstad, Øystein, Lunde, Merete, Nes, Ingolf F.

Journal:

International Journal of Microbiology

Année:

2010

Langue:

english

Fichier:

PDF, 148 KB

english, 2010

45

Comparing K-mer based methods for improved classification of 16S sequences

Vinje, Hilde, Liland, Kristian Hovde, Almøy, Trygve, Snipen, Lars

Journal:

BMC Bioinformatics

Année:

2015

Langue:

english

Fichier:

PDF, 804 KB

english, 2015

46

Rotation gene set testing for longitudinal expression data

Dørum, Guro, Snipen, Lars, Solheim, Margrete, Saebø, Solve

Journal:

Biometrical Journal

Année:

2014

Langue:

english

Fichier:

PDF, 411 KB

english, 2014

47

fixedTimeEvents: An R package for the distribution of distances between discrete events in fixed time

Liland, Kristian Hovde, Snipen, Lars

Journal:

Année:

2016

Langue:

english

Fichier:

PDF, 348 KB

english, 2016

48

The nucleotide composition of microbial genomes indicates differential patterns of selection on core and accessory genomes

Bohlin, Jon, Eldholm, Vegard, Pettersson, John H. O., Brynildsrud, Ola, Snipen, Lars

Journal:

Année:

2017

Langue:

english

Fichier:

PDF, 1.58 MB

english, 2017

49

Body fluid prediction from microbial patterns for forensic application

Hanssen, Eirik Nataas, Avershina, Ekaterina, Rudi, Knut, Gill, Peter, Snipen, Lars

Journal:

Forensic Science International: Genetics

Année:

2017

Langue:

english

Fichier:

PDF, 499 KB

english, 2017

50

A stable core gut microbiota across fresh- to saltwater transition for farmed Atlantic salmon

Rudi, Knut, Angell, Inga Leena, Pope, Phillip B., Vik, Jon Olav, Sandve, Simen Rød, Snipen, Lars-Gustav

Journal:

Applied and Environmental Microbiology

Année:

2017

Langue:

english

Fichier:

PDF, 1.26 MB

english, 2017